IL_5WE6_129

3D structure

PDB id

5WE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE6_129 not in the Motif Atlas

Homologous match to IL_5J7L_023

Geometric discrepancy: 0.1105

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5WE6|1|a|G|450
5WE6|1|a|A|451
5WE6|1|a|A|452
5WE6|1|a|G|453
5WE6|1|a|G|454
5WE6|1|a|G|455
*
5WE6|1|a|C|477
5WE6|1|a|A|478
5WE6|1|a|U|479
5WE6|1|a|U|480
5WE6|1|a|G|481
5WE6|1|a|A|482
5WE6|1|a|C|483

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16