IL_5WE6_174

3D structure

PDB id

5WE6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and cognate tRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGCAAG*CAACCC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WE6_174 not in the Motif Atlas

Geometric match to IL_6DVK_004

Geometric discrepancy: 0.359

The information below is about IL_6DVK_004

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_76308.6

Basepair signature

cWW-tSH-tHW-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5WE6|1|A|G|874
5WE6|1|A|G|875
5WE6|1|A|C|876
5WE6|1|A|A|877
5WE6|1|A|A|878
5WE6|1|A|G|879
*
5WE6|1|A|C|898
5WE6|1|A|A|899
5WE6|1|A|A|900
5WE6|1|A|C|901
5WE6|1|A|C|902
5WE6|1|A|C|903

Current chains

Chain A

23S rRNA

Nearby chains

Chain M

50S ribosomal protein L16