IL_5WF0_043

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

CUGUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5WF0|1|A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WF0_043 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0888

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

5WF0|1|A|C|1208
5WF0|1|A|U|1209
5WF0|1|A|G|1210
5WF0|1|A|U|1211
5WF0|1|A|G|1212
5WF0|1|A|A|1213
5WF0|1|A|A|1214
5WF0|1|A|G|1215
*
5WF0|1|A|U|1234
5WF0|1|A|G|1235
5WF0|1|A|G|1236
5WF0|1|A|A|1237
5WF0|1|A|G|1238

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L20