IL_5WF0_132

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

GAAGGG*CAUUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WF0_132 not in the Motif Atlas

Geometric match to IL_5J7L_023

Geometric discrepancy: 0.1326

The information below is about IL_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70801.1

Basepair signature

cWW-cWW-L-R-tWW-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5WF0|1|a|G|450
5WF0|1|a|A|451
5WF0|1|a|A|452
5WF0|1|a|G|453
5WF0|1|a|G|454
5WF0|1|a|G|455
*
5WF0|1|a|C|477
5WF0|1|a|A|478
5WF0|1|a|U|479
5WF0|1|a|U|480
5WF0|1|a|G|481
5WF0|1|a|A|482
5WF0|1|a|C|483

Current chains

Chain a

16S rRNA

Nearby chains

Chain p

30S ribosomal protein S16