IL_5WF0_182

3D structure

PDB id

5WF0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WF0_182 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.111

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5WF0|1|A|U|1851
5WF0|1|A|U|1852
5WF0|1|A|A|1853
5WF0|1|A|A|1854
5WF0|1|A|U|1855
5WF0|1|A|U|1856
5WF0|1|A|G|1857
5WF0|1|A|A|1858
5WF0|1|A|U|1859
5WF0|1|A|G|1860
*
5WF0|1|A|U|1882
5WF0|1|A|U|1883
5WF0|1|A|G|1884
5WF0|1|A|A|1885
5WF0|1|A|U|1886
5WF0|1|A|C|1887
5WF0|1|A|G|1888
5WF0|1|A|A|1889
5WF0|1|A|A|1890
5WF0|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains

Chain w

Transfer RNA; tRNA