IL_5WFK_015

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5WFK|1|A|G|801, 5WFK|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFK_015 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0786

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5WFK|1|A|G|674
5WFK|1|A|A|675
5WFK|1|A|A|676
5WFK|1|A|A|677
5WFK|1|A|C|678
*
5WFK|1|A|G|799
5WFK|1|A|A|800
5WFK|1|A|G|801
5WFK|1|A|A|802
5WFK|1|A|U|803
5WFK|1|A|A|804
5WFK|1|A|G|805
5WFK|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15