IL_5WFK_134

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUC*GAUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFK_134 not in the Motif Atlas

Homologous match to IL_6CZR_361

Geometric discrepancy: 0.307

The information below is about IL_6CZR_361

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_56539.1

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

4

Unit IDs

5WFK|1|a|G|597
5WFK|1|a|U|598
5WFK|1|a|C|599
*
5WFK|1|a|G|639
5WFK|1|a|A|640
5WFK|1|a|U|641
5WFK|1|a|A|642
5WFK|1|a|C|643

Current chains

Chain a

16S rRNA

Nearby chains

Chain h

30S ribosomal protein S8

Chain q

30S ribosomal protein S17