IL_5WFK_143
3D structure
- PDB id
- 5WFK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- GGAGUACGG*UUAAAAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WFK_143 not in the Motif Atlas
- Homologous match to IL_6CZR_146
- Geometric discrepancy: 0.1745
- The information below is about IL_6CZR_146
- Detailed Annotation
- 9x7 Sarcin-Ricin with inserted C; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_68633.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5WFK|1|a|G|887
5WFK|1|a|G|888
5WFK|1|a|A|889
5WFK|1|a|G|890
5WFK|1|a|U|891
5WFK|1|a|A|892
5WFK|1|a|C|893
5WFK|1|a|G|894
5WFK|1|a|G|895
*
5WFK|1|a|U|904
5WFK|1|a|U|905
5WFK|1|a|A|906
5WFK|1|a|A|907
5WFK|1|a|A|908
5WFK|1|a|A|909
5WFK|1|a|C|910
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain l
- 30S ribosomal protein S12
Coloring options: