3D structure

PDB id
5WFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
GUUGC*GAACUC
Length
11 nucleotides
Bulged bases
5WFK|1|a|U|1126
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WFK_156 not in the Motif Atlas
Homologous match to IL_5J7L_051
Geometric discrepancy: 0.1763
The information below is about IL_5J7L_051
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_06691.1
Basepair signature
cWW-cWS-L-R-L-R-cWW-L
Number of instances in this motif group
2

Unit IDs

5WFK|1|a|G|1124
5WFK|1|a|U|1125
5WFK|1|a|U|1126
5WFK|1|a|G|1127
5WFK|1|a|C|1128
*
5WFK|1|a|G|1144
5WFK|1|a|A|1145
5WFK|1|a|A|1146
5WFK|1|a|C|1147
5WFK|1|a|U|1148
5WFK|1|a|C|1149

Current chains

Chain a
16S rRNA

Nearby chains

Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1224 s