IL_5WFK_176

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFK_176 not in the Motif Atlas

Homologous match to IL_5J7L_386

Geometric discrepancy: 0.0632

The information below is about IL_5J7L_386

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

5WFK|1|A|G|1666
5WFK|1|A|G|1667
5WFK|1|A|A|1668
5WFK|1|A|A|1669
5WFK|1|A|C|1670
5WFK|1|A|U|1671
5WFK|1|A|A|1672
5WFK|1|A|G|1673
5WFK|1|A|G|1674
*
5WFK|1|A|C|1990
5WFK|1|A|U|1991
5WFK|1|A|G|1992
5WFK|1|A|U|1993
5WFK|1|A|C|1994

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14