IL_5WFK_177

3D structure

PDB id

5WFK (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFK_177 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1157

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5WFK|1|A|U|1851
5WFK|1|A|U|1852
5WFK|1|A|A|1853
5WFK|1|A|A|1854
5WFK|1|A|U|1855
5WFK|1|A|U|1856
5WFK|1|A|G|1857
5WFK|1|A|A|1858
5WFK|1|A|U|1859
5WFK|1|A|G|1860
*
5WFK|1|A|U|1882
5WFK|1|A|U|1883
5WFK|1|A|G|1884
5WFK|1|A|A|1885
5WFK|1|A|U|1886
5WFK|1|A|C|1887
5WFK|1|A|G|1888
5WFK|1|A|A|1889
5WFK|1|A|A|1890
5WFK|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains

Chain w

Transfer RNA; tRNA