3D structure

PDB id
5WFK (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C3)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.4 Å

Loop

Sequence
UACAAAG*CAUAAAG
Length
14 nucleotides
Bulged bases
5WFK|1|a|U|1286
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WFK_207 not in the Motif Atlas
Homologous match to IL_5J7L_054
Geometric discrepancy: 0.1559
The information below is about IL_5J7L_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_09129.2
Basepair signature
cWW-L-R-tWH-L-R-L-tWW-cWW
Number of instances in this motif group
2

Unit IDs

5WFK|1|a|U|1247
5WFK|1|a|A|1248
5WFK|1|a|C|1249
5WFK|1|a|A|1250
5WFK|1|a|A|1251
5WFK|1|a|A|1252
5WFK|1|a|G|1253
*
5WFK|1|a|C|1284
5WFK|1|a|A|1285
5WFK|1|a|U|1286
5WFK|1|a|A|1287
5WFK|1|a|A|1288
5WFK|1|a|A|1289
5WFK|1|a|G|1290

Current chains

Chain a
16S rRNA

Nearby chains

Chain g
30S ribosomal protein S7
Chain i
30S ribosomal protein S9
Chain j
30S ribosomal protein S10
Chain n
30S ribosomal protein S14

Coloring options:


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