IL_5WFS_015

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

5WFS|1|A|G|801, 5WFS|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFS_015 not in the Motif Atlas

Homologous match to IL_7RQB_018

Geometric discrepancy: 0.0647

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

5WFS|1|A|G|674
5WFS|1|A|A|675
5WFS|1|A|A|676
5WFS|1|A|A|677
5WFS|1|A|C|678
*
5WFS|1|A|G|799
5WFS|1|A|A|800
5WFS|1|A|G|801
5WFS|1|A|A|802
5WFS|1|A|U|803
5WFS|1|A|A|804
5WFS|1|A|G|805
5WFS|1|A|C|806

Current chains

Chain A

23S rRNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15