IL_5WFS_122

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GGAUAAC*GCUAAUAC

Length

15 nucleotides

Bulged bases

5WFS|1|a|U|173

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFS_122 not in the Motif Atlas

Homologous match to IL_5J7L_012

Geometric discrepancy: 0.2779

The information below is about IL_5J7L_012

Detailed Annotation

tWH-tWH-tHW-tHW

Broad Annotation

No text annotation

Motif group

IL_80604.6

Basepair signature

cWW-cWW-tWH-tWH-tHW-tHW-cWW

Number of instances in this motif group

3

Unit IDs

5WFS|1|a|G|147
5WFS|1|a|G|148
5WFS|1|a|A|149
5WFS|1|a|U|150
5WFS|1|a|A|151
5WFS|1|a|A|152
5WFS|1|a|C|153
*
5WFS|1|a|G|168
5WFS|1|a|C|169
5WFS|1|a|U|170
5WFS|1|a|A|171
5WFS|1|a|A|172
5WFS|1|a|U|173
5WFS|1|a|A|174
5WFS|1|a|C|175

Current chains

Chain a

16S rRNA

Nearby chains

Chain t

30S ribosomal protein S20