IL_5WFS_181

3D structure

PDB id

5WFS (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome-EF-Tu H84A complex with GTP and near-cognate tRNA (Complex C4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WFS_181 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0962

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

5WFS|1|A|U|1851
5WFS|1|A|U|1852
5WFS|1|A|A|1853
5WFS|1|A|A|1854
5WFS|1|A|U|1855
5WFS|1|A|U|1856
5WFS|1|A|G|1857
5WFS|1|A|A|1858
5WFS|1|A|U|1859
5WFS|1|A|G|1860
*
5WFS|1|A|U|1882
5WFS|1|A|U|1883
5WFS|1|A|G|1884
5WFS|1|A|A|1885
5WFS|1|A|U|1886
5WFS|1|A|C|1887
5WFS|1|A|G|1888
5WFS|1|A|A|1889
5WFS|1|A|A|1890
5WFS|1|A|G|1891

Current chains

Chain A

23S rRNA

Nearby chains

Chain w

Transfer RNA; tRNA