IL_5WIS_084

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUGUGAAC*GGGAG

Length

13 nucleotides

Bulged bases

5WIS|1|1A|U|2154

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIS_084 not in the Motif Atlas

Homologous match to IL_3U4M_004

Geometric discrepancy: 0.4447

The information below is about IL_3U4M_004

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

5WIS|1|1A|C|2151
5WIS|1|1A|U|2152
5WIS|1|1A|G|2153
5WIS|1|1A|U|2154
5WIS|1|1A|G|2155
5WIS|1|1A|A|2156
5WIS|1|1A|A|2157
5WIS|1|1A|C|2158
*
5WIS|1|1A|G|2177
5WIS|1|1A|G|2178
5WIS|1|1A|G|2179
5WIS|1|1A|A|2180
5WIS|1|1A|G|2181

Current chains

Chain 1A

23S ribosomal RNA

Nearby chains