IL_5WIS_186

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

5WIS|1|2A|U|504, 5WIS|1|2A|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIS_186 not in the Motif Atlas

Geometric match to IL_7RQB_014

Geometric discrepancy: 0.0513

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

5WIS|1|2A|G|481
5WIS|1|2A|A|482
5WIS|1|2A|A|483
5WIS|1|2A|C|484
*
5WIS|1|2A|G|496
5WIS|1|2A|A|497
5WIS|1|2A|G|498
5WIS|1|2A|U|499
5WIS|1|2A|G|500
5WIS|1|2A|A|501
5WIS|1|2A|A|502
5WIS|1|2A|A|503
5WIS|1|2A|U|504
5WIS|1|2A|A|505
5WIS|1|2A|G|506
5WIS|1|2A|A|507
5WIS|1|2A|G|508
5WIS|1|2A|C|509

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2Y

50S ribosomal protein L24