IL_5WIS_218

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

GCAAU*AGC

Length

8 nucleotides

Bulged bases

5WIS|1|2A|G|1332

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIS_218 not in the Motif Atlas

Homologous match to IL_7RQB_051

Geometric discrepancy: 0.0565

The information below is about IL_7RQB_051

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.6

Basepair signature

cWW-cWS-cSH-tWH-cWW-L

Number of instances in this motif group

14

Unit IDs

5WIS|1|2A|G|1319
5WIS|1|2A|C|1320
5WIS|1|2A|A|1321
5WIS|1|2A|A|1322
5WIS|1|2A|U|1323
*
5WIS|1|2A|A|1331
5WIS|1|2A|G|1332
5WIS|1|2A|C|1333

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2W

50S ribosomal protein L22

Chain 2X

50S ribosomal protein L23