IL_5WIS_244

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGAAA(5MU)UC(5MC)UUG*C(5MC)UG

Length

16 nucleotides

Bulged bases

5WIS|1|2A|A|1938, 5WIS|1|2A|U|1944, 5WIS|1|2A|U|1963

QA status

Modified nucleotides: 5MU, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIS_244 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1261

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_84014.1

Basepair signature

cWW-L-R-cHW-cWW-L-L-tSW-L

Number of instances in this motif group

8

Unit IDs

5WIS|1|2A|C|1934
5WIS|1|2A|G|1935
5WIS|1|2A|A|1936
5WIS|1|2A|A|1937
5WIS|1|2A|A|1938
5WIS|1|2A|5MU|1939
5WIS|1|2A|U|1940
5WIS|1|2A|C|1941
5WIS|1|2A|5MC|1942
5WIS|1|2A|U|1943
5WIS|1|2A|U|1944
5WIS|1|2A|G|1945
*
5WIS|1|2A|C|1961
5WIS|1|2A|5MC|1962
5WIS|1|2A|U|1963
5WIS|1|2A|G|1964

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2

Chain 2a

Small subunit ribosomal RNA; SSU rRNA

Chain 2w

Transfer RNA; tRNA

Chain 2x

Transfer RNA; tRNA