IL_5WIS_351

3D structure

PDB id

5WIS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with methymycin and bound to mRNA and A-, P- and E-site tRNAs at 2.7A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

5WIS|1|2A|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIS_351 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1178

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

5WIS|1|2A|C|844
5WIS|1|2A|G|845
5WIS|1|2A|C|846
5WIS|1|2A|U|847
5WIS|1|2A|G|848
5WIS|1|2A|A|849
5WIS|1|2A|C|850
*
5WIS|1|2A|G|927
5WIS|1|2A|G|928
5WIS|1|2A|U|930
5WIS|1|2A|G|931
5WIS|1|2A|G|932
5WIS|1|2A|A|933
5WIS|1|2A|G|934

Current chains

Chain 2A

23S ribosomal RNA

Nearby chains

Chain 1P

50S ribosomal protein L15

Chain 23

50S ribosomal protein L30