IL_5WIT_060

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAAG*UGACAAC

Length

12 nucleotides

Bulged bases

5WIT|1|1A|C|1590

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIT_060 not in the Motif Atlas

Homologous match to IL_7RQB_063

Geometric discrepancy: 0.0595

The information below is about IL_7RQB_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_02656.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5WIT|1|1A|G|1572
5WIT|1|1A|G|1573
5WIT|1|1A|A|1574
5WIT|1|1A|A|1575
5WIT|1|1A|G|1576
*
5WIT|1|1A|U|1587
5WIT|1|1A|G|1588
5WIT|1|1A|A|1589
5WIT|1|1A|C|1590
5WIT|1|1A|A|1591
5WIT|1|1A|A|1592
5WIT|1|1A|C|1593

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains