IL_5WIT_083

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIT_083 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3629

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

5WIT|1|1A|G|2146
5WIT|1|1A|G|2147
5WIT|1|1A|A|2148
5WIT|1|1A|G|2149
*
5WIT|1|1A|C|2183
5WIT|1|1A|G|2184
5WIT|1|1A|C|2185
5WIT|1|1A|C|2186
5WIT|1|1A|G|2187
5WIT|1|1A|G|2188
5WIT|1|1A|U|2189
5WIT|1|1A|G|2190
5WIT|1|1A|A|2191
5WIT|1|1A|A|2192
5WIT|1|1A|A|2193
5WIT|1|1A|U|2194
5WIT|1|1A|A|2195
5WIT|1|1A|C|2196

Current chains

Chain 1A

23S Ribosomal RNA

Nearby chains

Chain 1y

Transfer RNA; tRNA