3D structure

PDB id
5WIT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GGAAUU*AGGAAC
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WIT_142 not in the Motif Atlas
Geometric match to IL_4LFB_030
Geometric discrepancy: 0.081
The information below is about IL_4LFB_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_04668.2
Basepair signature
cWW-cWW-cWW-L-R-L-R-cWW
Number of instances in this motif group
8

Unit IDs

5WIT|1|1a|G|673
5WIT|1|1a|G|674
5WIT|1|1a|A|675
5WIT|1|1a|A|676
5WIT|1|1a|U|677
5WIT|1|1a|U|678
*
5WIT|1|1a|A|712
5WIT|1|1a|G|713
5WIT|1|1a|G|714
5WIT|1|1a|A|715
5WIT|1|1a|A|716
5WIT|1|1a|C|717

Current chains

Chain 1a
16S Ribosomal RNA

Nearby chains

Chain 1D
50S ribosomal protein L2
Chain 1f
30S ribosomal protein S6
Chain 1k
30S ribosomal protein S11
Chain 1r
30S ribosomal protein S18

Coloring options:


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