IL_5WIT_214

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

CGAUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

5WIT|1|2A|U|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIT_214 not in the Motif Atlas

Homologous match to IL_7RQB_047

Geometric discrepancy: 0.0866

The information below is about IL_7RQB_047

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.2

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

28

Unit IDs

5WIT|1|2A|C|1208
5WIT|1|2A|G|1209
5WIT|1|2A|A|1210
5WIT|1|2A|U|1211
5WIT|1|2A|G|1212
5WIT|1|2A|A|1213
5WIT|1|2A|A|1214
5WIT|1|2A|G|1215
*
5WIT|1|2A|U|1234
5WIT|1|2A|G|1235
5WIT|1|2A|G|1236
5WIT|1|2A|A|1237
5WIT|1|2A|G|1238

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2U

50S ribosomal protein L20