IL_5WIT_246

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

ACGA*UCUAU

Length

9 nucleotides

Bulged bases

5WIT|1|2A|C|2055, 5WIT|1|2A|A|2614

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIT_246 not in the Motif Atlas

Homologous match to IL_7RQB_079

Geometric discrepancy: 0.0663

The information below is about IL_7RQB_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01206.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

5WIT|1|2A|A|2054
5WIT|1|2A|C|2055
5WIT|1|2A|G|2056
5WIT|1|2A|A|2057
*
5WIT|1|2A|U|2611
5WIT|1|2A|C|2612
5WIT|1|2A|U|2613
5WIT|1|2A|A|2614
5WIT|1|2A|U|2615

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 25

50S ribosomal protein L32

Chain 2E

50S ribosomal protein L3

Chain 2W

50S ribosomal protein L22