IL_5WIT_252

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIT_252 not in the Motif Atlas

Geometric match to IL_3U4M_002

Geometric discrepancy: 0.3938

The information below is about IL_3U4M_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

5WIT|1|2A|G|2110
5WIT|1|2A|C|2111
5WIT|1|2A|G|2112
5WIT|1|2A|U|2113
5WIT|1|2A|A|2114
5WIT|1|2A|G|2115
5WIT|1|2A|G|2116
5WIT|1|2A|A|2117
5WIT|1|2A|U|2118
5WIT|1|2A|A|2119
5WIT|1|2A|G|2120
*
5WIT|1|2A|C|2178
5WIT|1|2A|C|2179

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA