IL_5WIT_268

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

5WIT|1|2A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIT_268 not in the Motif Atlas

Homologous match to IL_7RQB_102

Geometric discrepancy: 0.0438

The information below is about IL_7RQB_102

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.1

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

5WIT|1|2A|U|2636
5WIT|1|2A|U|2637
5WIT|1|2A|G|2638
5WIT|1|2A|A|2639
5WIT|1|2A|G|2640
*
5WIT|1|2A|C|2774
5WIT|1|2A|A|2775
5WIT|1|2A|A|2776
5WIT|1|2A|G|2777
5WIT|1|2A|A|2778
5WIT|1|2A|U|2779
5WIT|1|2A|G|2780
5WIT|1|2A|A|2781
5WIT|1|2A|G|2782

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2E

50S ribosomal protein L3

Chain 2N

50S ribosomal protein L13