IL_5WIT_313

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GAGUAG*CGCAGAUAC

Length

15 nucleotides

Bulged bases

5WIT|1|2a|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIT_313 not in the Motif Atlas

Homologous match to IL_4LFB_031

Geometric discrepancy: 0.115

The information below is about IL_4LFB_031

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_95727.1

Basepair signature

cWW-L-tSH-L-tHW-tHS-R-cWW-L

Number of instances in this motif group

1

Unit IDs

5WIT|1|2a|G|683
5WIT|1|2a|A|684
5WIT|1|2a|G|685
5WIT|1|2a|U|686
5WIT|1|2a|A|687
5WIT|1|2a|G|688
*
5WIT|1|2a|C|699
5WIT|1|2a|G|700
5WIT|1|2a|C|701
5WIT|1|2a|A|702
5WIT|1|2a|G|703
5WIT|1|2a|A|704
5WIT|1|2a|U|705
5WIT|1|2a|A|706
5WIT|1|2a|C|707

Current chains

Chain 2a

16S Ribosomal RNA

Nearby chains

Chain 2A

Large subunit ribosomal RNA; LSU rRNA

Chain 2k

30S ribosomal protein S11