IL_5WIT_356

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GUAG*CGC

Length

7 nucleotides

Bulged bases

5WIT|1|2A|A|1490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIT_356 not in the Motif Atlas

Geometric match to IL_7ELQ_002

Geometric discrepancy: 0.234

The information below is about IL_7ELQ_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

5WIT|1|2A|G|1488
5WIT|1|2A|U|1489
5WIT|1|2A|A|1490
5WIT|1|2A|G|1491
*
5WIT|1|2A|C|1499
5WIT|1|2A|G|1500
5WIT|1|2A|C|1501

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2D

50S ribosomal protein L2