3D structure

PDB id
5WIT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution
Experimental method
X-RAY DIFFRACTION
Resolution
2.6 Å

Loop

Sequence
GGAG*CGCCGGUGAAAUAC
Length
18 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5WIT_368 not in the Motif Atlas
Homologous match to IL_3U4M_003
Geometric discrepancy: 0.3473
The information below is about IL_3U4M_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_75283.2
Basepair signature
cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R
Number of instances in this motif group
3

Unit IDs

5WIT|1|2A|G|2124
5WIT|1|2A|G|2125
5WIT|1|2A|A|2126
5WIT|1|2A|G|2127
*
5WIT|1|2A|C|2161
5WIT|1|2A|G|2162
5WIT|1|2A|C|2163
5WIT|1|2A|C|2164
5WIT|1|2A|G|2165
5WIT|1|2A|G|2166
5WIT|1|2A|U|2167
5WIT|1|2A|G|2168
5WIT|1|2A|A|2169
5WIT|1|2A|A|2170
5WIT|1|2A|A|2171
5WIT|1|2A|U|2172
5WIT|1|2A|A|2173
5WIT|1|2A|C|2174

Current chains

Chain 2A
23S Ribosomal RNA

Nearby chains

Chain 2y
Transfer RNA; tRNA

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5244 s