IL_5WIT_368

3D structure

PDB id

5WIT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 70S ribosome in complex with pikromycin and bound to mRNA and A-, P- and E-site tRNAs at 2.6A resolution

Experimental method

X-RAY DIFFRACTION

Resolution

2.6 Å

Loop

Sequence

GGAG*CGCCGGUGAAAUAC

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WIT_368 not in the Motif Atlas

Homologous match to IL_3U4M_003

Geometric discrepancy: 0.3473

The information below is about IL_3U4M_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75283.2

Basepair signature

cWW-tSS-L-R-L-tHS-L-cWW-L-tWH-tWH-L-L-R

Number of instances in this motif group

3

Unit IDs

5WIT|1|2A|G|2124
5WIT|1|2A|G|2125
5WIT|1|2A|A|2126
5WIT|1|2A|G|2127
*
5WIT|1|2A|C|2161
5WIT|1|2A|G|2162
5WIT|1|2A|C|2163
5WIT|1|2A|C|2164
5WIT|1|2A|G|2165
5WIT|1|2A|G|2166
5WIT|1|2A|U|2167
5WIT|1|2A|G|2168
5WIT|1|2A|A|2169
5WIT|1|2A|A|2170
5WIT|1|2A|A|2171
5WIT|1|2A|U|2172
5WIT|1|2A|A|2173
5WIT|1|2A|C|2174

Current chains

Chain 2A

23S Ribosomal RNA

Nearby chains

Chain 2y

Transfer RNA; tRNA