IL_5WLC_002

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AA*UGUUUAAU

Length

10 nucleotides

Bulged bases

5WLC|1|L0|G|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_002 not in the Motif Atlas

Geometric match to IL_7Q80_003

Geometric discrepancy: 0.2024

The information below is about IL_7Q80_003

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

5WLC|1|L0|A|94
5WLC|1|L0|A|95
*
5WLC|1|L0|U|149
5WLC|1|L0|G|150
5WLC|1|L0|U|151
5WLC|1|L0|U|152
5WLC|1|L0|U|153
5WLC|1|L0|A|154
5WLC|1|L0|A|155
5WLC|1|L0|U|156

Current chains

Chain L0

5' ETS

Nearby chains

Chain LH

Utp17

Chain LJ

Utp15

Chain LL

Utp5