IL_5WLC_003

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_003 not in the Motif Atlas

Geometric match to IL_3R1C_012

Geometric discrepancy: 0.1084

The information below is about IL_3R1C_012

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

5WLC|1|L0|G|97
5WLC|1|L0|G|98
5WLC|1|L0|U|99
*
5WLC|1|L0|A|145
5WLC|1|L0|G|146
5WLC|1|L0|C|147

Current chains

Chain L0

5' ETS

Nearby chains

Chain LH

Utp17

Chain LJ

Utp15

Chain LL

Utp5