IL_5WLC_009

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUU*GAGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_009 not in the Motif Atlas

Geometric match to IL_5J7L_283

Geometric discrepancy: 0.2274

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5WLC|1|L0|A|187
5WLC|1|L0|A|188
5WLC|1|L0|U|189
5WLC|1|L0|U|190
*
5WLC|1|L0|G|207
5WLC|1|L0|A|208
5WLC|1|L0|G|209
5WLC|1|L0|U|210

Current chains

Chain L0

5' ETS

Nearby chains

Chain ND

Bud21

Chain SY

Utp11