IL_5WLC_011

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GC*GCGAUU

Length

8 nucleotides

Bulged bases

5WLC|1|L0|G|259, 5WLC|1|L0|U|261

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_011 not in the Motif Atlas

Geometric match to IL_1R3E_002

Geometric discrepancy: 0.2464

The information below is about IL_1R3E_002

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

5WLC|1|L0|G|250
5WLC|1|L0|C|251
*
5WLC|1|L0|G|257
5WLC|1|L0|C|258
5WLC|1|L0|G|259
5WLC|1|L0|A|260
5WLC|1|L0|U|261
5WLC|1|L0|U|262

Current chains

Chain L0

5' ETS

Nearby chains

Chain SB

Nop58

Chain SI

Bms1

Chain SN

Utp30

Chain SV

Rrt14

Chain SY

Utp11