IL_5WLC_040

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CAU*AAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_040 not in the Motif Atlas

Homologous match to IL_4V88_406

Geometric discrepancy: 0.2223

The information below is about IL_4V88_406

Detailed Annotation

Isolated near basepair

Broad Annotation

Isolated near basepair

Motif group

IL_76004.2

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

18

Unit IDs

5WLC|1|L1|C|411
5WLC|1|L1|A|412
5WLC|1|L1|U|413
*
5WLC|1|L1|A|420
5WLC|1|L1|A|421
5WLC|1|L1|G|422

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L6

rpS6_eS6

Chain LX

Kre33

Chain SI

Bms1