IL_5WLC_044

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

UACA*UUAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_044 not in the Motif Atlas

Geometric match to IL_4UYK_003

Geometric discrepancy: 0.2374

The information below is about IL_4UYK_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

5WLC|1|L1|U|517
5WLC|1|L1|A|518
5WLC|1|L1|C|519
5WLC|1|L1|A|520
*
5WLC|1|L1|U|532
5WLC|1|L1|U|533
5WLC|1|L1|A|534
5WLC|1|L1|A|535

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain L9

rpS9_uS4

Chain LF

rpS24_eS24

Chain NC

Lcp5

Chain SI

Bms1