IL_5WLC_045

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GG*CAGC

Length

6 nucleotides

Bulged bases

5WLC|1|L1|A|585, 5WLC|1|L1|G|586

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_045 not in the Motif Atlas

Geometric match to IL_7A0S_090

Geometric discrepancy: 0.396

The information below is about IL_7A0S_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_44609.2

Basepair signature

cWW-cWW

Number of instances in this motif group

24

Unit IDs

5WLC|1|L1|G|551
5WLC|1|L1|G|552
*
5WLC|1|L1|C|584
5WLC|1|L1|A|585
5WLC|1|L1|G|586
5WLC|1|L1|C|587

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NB

Sas10

Chain SI

Bms1

Chain SR

rpS23_uS12

Chain SY

Utp11