IL_5WLC_061

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAU*GUGAU

Length

9 nucleotides

Bulged bases

5WLC|1|L1|A|1436

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_061 not in the Motif Atlas

Geometric match to IL_1MFQ_004

Geometric discrepancy: 0.2574

The information below is about IL_1MFQ_004

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

5WLC|1|L1|G|1273
5WLC|1|L1|C|1274
5WLC|1|L1|A|1275
5WLC|1|L1|U|1276
*
5WLC|1|L1|G|1433
5WLC|1|L1|U|1434
5WLC|1|L1|G|1435
5WLC|1|L1|A|1436
5WLC|1|L1|U|1437

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain SZ

Enp1