IL_5WLC_062

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUUG*CUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_062 not in the Motif Atlas

Homologous match to IL_4V88_461

Geometric discrepancy: 0.3778

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5WLC|1|L1|C|1495
5WLC|1|L1|U|1496
5WLC|1|L1|U|1497
5WLC|1|L1|G|1498
*
5WLC|1|L1|C|1509
5WLC|1|L1|U|1510
5WLC|1|L1|U|1511
5WLC|1|L1|G|1512

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NA

Mpp10

Chain NB

Sas10

Chain SI

Bms1

Chain SN

Utp30

Chain SQ

Fcf2

Chain SY

Utp11