IL_5WLC_070

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AUUGAG*CUUUU

Length

11 nucleotides

Bulged bases

5WLC|1|L0|U|176

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_070 not in the Motif Atlas

Geometric match to IL_8VMB_003

Geometric discrepancy: 0.3121

The information below is about IL_8VMB_003

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

5WLC|1|L0|A|175
5WLC|1|L0|U|176
5WLC|1|L0|U|177
5WLC|1|L0|G|178
5WLC|1|L0|A|179
5WLC|1|L0|G|180
*
5WLC|1|L0|C|217
5WLC|1|L0|U|218
5WLC|1|L0|U|219
5WLC|1|L0|U|220
5WLC|1|L0|U|221

Current chains

Chain L0

5' ETS

Nearby chains

Chain LN

Utp4

Chain ND

Bud21