IL_5WLC_081

3D structure

PDB id

5WLC (explore in PDB, NAKB, or RNA 3D Hub)

Description

The complete structure of the small subunit processome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGGGG*CCAAG

Length

11 nucleotides

Bulged bases

5WLC|1|L1|G|876

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WLC_081 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3064

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

5WLC|1|L1|C|874
5WLC|1|L1|G|875
5WLC|1|L1|G|876
5WLC|1|L1|G|877
5WLC|1|L1|G|878
5WLC|1|L1|G|879
*
5WLC|1|L1|C|949
5WLC|1|L1|C|950
5WLC|1|L1|A|951
5WLC|1|L1|A|952
5WLC|1|L1|G|953

Current chains

Chain L1

18S pre-rRNA

Nearby chains

Chain NF

rpS13_uS15

Chain NJ

Rrp5

Chain NK

Krr1