IL_5WNP_038
3D structure
- PDB id
- 5WNP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of 30S ribosomal subunit from Thermus thermophilus
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- GG*CAC
- Length
- 5 nucleotides
- Bulged bases (A, C, G, U)
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5WNP_038 not in the Motif Atlas
- Homologous match to IL_4LFB_038
- Geometric discrepancy: 0.0838
- The information below is about IL_4LFB_038
- Detailed Annotation
- Minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_42622.5
- Basepair signature
- cWW-cSH-tHS-cWW
- Number of instances in this motif group
- 33
Unit IDs
5WNP|1|A|G|953
5WNP|1|A|G|954
*
5WNP|1|A|C|1226
5WNP|1|A|A|1227
5WNP|1|A|C|1228
Current chains
- Chain A
- 16S Ribosomal RNA rRNA
Nearby chains
- Chain M
- 30S ribosomal protein S13
- Chain S
- 30S ribosomal protein S19
Coloring options: