IL_5WNP_062

3D structure

PDB id

5WNP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGGAG*CAG

Length

9 nucleotides

Bulged bases

5WNP|1|A|G|1443

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WNP_062 not in the Motif Atlas

Homologous match to IL_4LFB_064

Geometric discrepancy: 0.1533

The information below is about IL_4LFB_064

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49061.1

Basepair signature

cWW-L-R-L-cWW-L

Number of instances in this motif group

6

Unit IDs

5WNP|1|A|C|1440
5WNP|1|A|G|1441
5WNP|1|A|G|1442
5WNP|1|A|G|1443
5WNP|1|A|A|1446
5WNP|1|A|G|1447
*
5WNP|1|A|C|1459
5WNP|1|A|A|1460
5WNP|1|A|G|1461

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain T

30S ribosomal protein S20