IL_5WNR_019

3D structure

PDB id

5WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAAACC*GACUGAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WNR_019 not in the Motif Atlas

Geometric match to IL_4LFB_019

Geometric discrepancy: 0.222

The information below is about IL_4LFB_019

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31561.1

Basepair signature

cWW-L-R-tWH-tWH-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

5WNR|1|A|G|450
5WNR|1|A|A|451
5WNR|1|A|A|452
5WNR|1|A|A|453
5WNR|1|A|C|454
5WNR|1|A|C|455
*
5WNR|1|A|G|477
5WNR|1|A|A|478
5WNR|1|A|C|479
5WNR|1|A|U|480
5WNR|1|A|G|481
5WNR|1|A|A|482
5WNR|1|A|C|483

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain P

30S ribosomal protein S16