IL_5WNR_035

3D structure

PDB id

5WNR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WNR_035 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0409

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

5WNR|1|A|C|779
5WNR|1|A|A|780
5WNR|1|A|A|781
5WNR|1|A|A|782
5WNR|1|A|C|783
*
5WNR|1|A|G|799
5WNR|1|A|G|800
5WNR|1|A|U|801
5WNR|1|A|A|802
5WNR|1|A|G|803

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains

Chain K

30S ribosomal protein S11