IL_5WNU_064

3D structure

PDB id

5WNU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of 30S ribosomal subunit from Thermus thermophilus

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

UAGGG*CCUA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WNU_064 not in the Motif Atlas

Geometric match to IL_8C3A_009

Geometric discrepancy: 0.3191

The information below is about IL_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90170.1

Basepair signature

cWW-L-R-L-cWW-cWW

Number of instances in this motif group

5

Unit IDs

5WNU|1|A|U|1000
5WNU|1|A|A|1001
5WNU|1|A|G|1002
5WNU|1|A|G|1003
5WNU|1|A|G|1003|||A
*
5WNU|1|A|C|1038
5WNU|1|A|C|1039
5WNU|1|A|U|1040
5WNU|1|A|A|1041

Current chains

Chain A

16S Ribosomal RNA rRNA

Nearby chains