IL_5WYJ_002

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GAC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_002 not in the Motif Atlas

Geometric match to IL_7A0S_014

Geometric discrepancy: 0.1729

The information below is about IL_7A0S_014

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5WYJ|1|3A|G|4
5WYJ|1|3A|A|5
5WYJ|1|3A|C|6
*
5WYJ|1|SA|G|1118
5WYJ|1|SA|G|1119
5WYJ|1|SA|U|1120

Current chains

Chain 3A

U3 RNA

Chain SA

18S ribosomal RNA

Nearby chains

Chain U2

Utp11