IL_5WYJ_006

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GAC*GCAGUC

Length

9 nucleotides

Bulged bases

5WYJ|1|3A|U|324

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5WYJ|1|3A|G|85
5WYJ|1|3A|A|86
5WYJ|1|3A|C|96
*
5WYJ|1|3A|G|320
5WYJ|1|3A|C|321
5WYJ|1|3A|A|322
5WYJ|1|3A|G|323
5WYJ|1|3A|U|324
5WYJ|1|3A|C|325

Current chains

Chain 3A

U3 RNA

Nearby chains

Chain 3B

rRNA 2'-O-methyltransferase fibrillarin

Chain 3E

Nucleolar protein 58

Chain 3H

13 kDa ribonucleoprotein-associated protein

Chain UC

Unassigned helices