IL_5WYJ_013

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

GUCGC*GUC

Length

8 nucleotides

Bulged bases

5WYJ|1|5A|U|108

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_013 not in the Motif Atlas

Geometric match to IL_4E48_005

Geometric discrepancy: 0.2246

The information below is about IL_4E48_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5WYJ|1|5A|G|107
5WYJ|1|5A|U|108
5WYJ|1|5A|C|109
5WYJ|1|5A|G|110
5WYJ|1|5A|C|111
*
5WYJ|1|5A|G|135
5WYJ|1|5A|U|136
5WYJ|1|5A|C|137

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain AF

Utp15

Chain UB

Helical domain protein