IL_5WYJ_020

3D structure

PDB id

5WYJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the 90S small subunit pre-ribosome (Dhr1-depleted, Enp1-TAP, state 1)

Experimental method

ELECTRON MICROSCOPY

Resolution

8.7 Å

Loop

Sequence

CC*GUG

Length

5 nucleotides

Bulged bases

5WYJ|1|5A|U|382

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5WYJ_020 not in the Motif Atlas

Geometric match to IL_4FRG_002

Geometric discrepancy: 0.2589

The information below is about IL_4FRG_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5WYJ|1|5A|C|342
5WYJ|1|5A|C|343
*
5WYJ|1|5A|G|381
5WYJ|1|5A|U|382
5WYJ|1|5A|G|383

Current chains

Chain 5A

5ETS RNA

Nearby chains

Chain U1

Utp7

Chain UC

Unassigned helices